Protein Details: Gamma-aminobutyric acid receptor-associated protein

Protein ID

ICDB_Pro_0648

Protein Name

Gamma-aminobutyric acid receptor-associated protein

Gene Name

Gabarap

Organism

Rattus norvegicus (Rat)

Length

117 amino acids

AlphaFoldDB

AF-P60517-F1-model_v4.pdb

Function

Ubiquitin-like modifier that plays a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton. Involved in autophagy: while LC3s are involved in elongation of the phagophore membrane; the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (By similarity). Through its interaction with the reticulophagy receptor TEX264; participates in the remodeling of subdomains of the endoplasmic reticulum into autophagosomes upon nutrient stress; which then fuse with lysosomes for endoplasmic reticulum turnover (By similarity). Also required for the local activation of the CUL3(KBTBD6/7) E3 ubiquitin ligase complex; regulating ubiquitination a nd degradation of TIAM1; a guanyl-nucleotide exchange factor (GEF) that activates RAC1 and downstream signal transduction. Thereby; regulates different biological processes including the organization of the cytoskeleton; cell migration and proliferation (By similarity). Involved in apoptosis (By similarity).

Sequence

MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL

PDB Structures

Ligand Binding

1. DICL_CP

2. DICL_Pep

Binding Site

Disease

Location

Expressed in brain (at protein level) (PubMed:25172774). Can be found in both somatodendritic and axonal compartment of neurons (PubMed:11461150).

DOI ID

10.1046/j.1471-4159.2000.0750644.x; 10.1101/gr.2596504; 10.1073/pnas.97.15.8594; 10.1006/mcne.2001.1005; 10.1016/j.ejcb.2014.07.007; 10.1093/embo-reports/kvf026

RefSeq

NP_742033.1

Feature